Nessus Grep is a perl script which parses the session data files that nessus creates if you have session saving on. Using it you can search the data files for keywords and output the data in text, html, xml.
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Ubt-Scan is a simple extensible vulnerability scanner written in perl. Includes some external exploits.
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Infiltrator is a unix trojan creation program.
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Cisco Auditing Tool - Perl script which scans cisco routers for common vulnerabilities. Checks for default passwords, easily guessable community names, and the IOS history bug. Includes support for plugins and scanning multiple hosts.
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